PH01000405G0640's details annotation
1.Annotation
ICBR annotation: joka8, putative, expressed
Blast result AT2G24260 : 2.40E-47
Blast annotation: LJRHL1-like 1
2.Location
Scaffold: PH01000405
Strand: +
| Region | Start | End |
| gene | 544896 | 550219 |
| mRNA | 544896 | 550219 |
| exon | 544896 | 545541 |
| exon | 545883 | 545957 |
| exon | 546040 | 546201 |
| exon | 546417 | 546530 |
| exon | 547045 | 547104 |
| exon | 547275 | 547343 |
| exon | 547700 | 550219 |
| CDS | 545071 | 545541 |
| CDS | 545883 | 545957 |
| CDS | 546040 | 546201 |
| CDS | 546417 | 546530 |
| CDS | 547045 | 547104 |
| CDS | 547275 | 547343 |
| CDS | 547700 | 548116 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | bHLH |
| Transcription_Regulator(from PlantTFDB) | bHLH |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0046983 | protein dimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.