PH01000406G0890's details annotation
1.Annotation
ICBR annotation: OsSub19 - Putative Subtilisin homologue, expressed
Blast result AT4G20850 : 0.00E+00
Blast annotation: tripeptidyl peptidase ii
2.Location
Scaffold: PH01000406
Strand: +
| Region | Start | End |
| gene | 640966 | 647770 |
| mRNA | 640966 | 647770 |
| exon | 640966 | 641420 |
| exon | 642367 | 642621 |
| exon | 643023 | 643132 |
| exon | 643218 | 643298 |
| exon | 643643 | 643729 |
| exon | 643804 | 643946 |
| exon | 644458 | 644608 |
| exon | 644686 | 644808 |
| exon | 645039 | 645122 |
| exon | 645238 | 645425 |
| exon | 646305 | 646413 |
| exon | 646811 | 647005 |
| exon | 647122 | 647243 |
| exon | 647349 | 647428 |
| exon | 647591 | 647770 |
| CDS | 641336 | 641420 |
| CDS | 642367 | 642621 |
| CDS | 643023 | 643132 |
| CDS | 643218 | 643298 |
| CDS | 643643 | 643729 |
| CDS | 643804 | 643946 |
| CDS | 644458 | 644608 |
| CDS | 644686 | 644808 |
| CDS | 645039 | 645122 |
| CDS | 645238 | 645425 |
| CDS | 646305 | 646413 |
| CDS | 646811 | 647005 |
| CDS | 647122 | 647243 |
| CDS | 647349 | 647428 |
| CDS | 647591 | 647715 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001869 | DNA recombination, (1->3)-beta-D-glucan biosynthetic process, 1,3-beta-D-glucan synthase complex, Ubiquitin_mediated_proteolysis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00082.21 | Peptidase_S8 | 20 | 562 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004252 | serine-type endopeptidase activity |
| GO:0006508 | proteolysis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.