Annotation of co-expression genes

PH01000407G0040's details annotation

1.Annotation

ICBR annotation: kinesin motor domain containing protein, expressed

Blast result AT1G12430 : 0.00E+00
Blast annotation: armadillo repeat kinesin 3

2.Location

Scaffold: PH01000407
Strand: -

RegionStartEnd
gene3482247705
mRNA3482247705
exon3482236279
exon3638436512
exon3702237165
exon3761037735
exon3784737972
exon3853238624
exon3923939380
exon3979839929
exon4001740154
exon4037540467
exon4135641559
exon4172641814
exon4198042129
exon4253242697
exon4278143002
exon4311843303
exon4369743819
exon4390244002
exon4547647705
CDS3611936279
CDS3638436512
CDS3702237165
CDS3761037735
CDS3784737972
CDS3853238624
CDS3923939380
CDS3979839929
CDS4001740154
CDS4037540467
CDS4135641559
CDS4172641814
CDS4198042129
CDS4253242697
CDS4278143002
CDS4311843303
CDS4369743819
CDS4390244002
CDS4547645683

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001354STE_STE20-YSK (from iTAK)
GT2 GlycosylTransferases
Glycosylphosphatidylinositol(GPI)-anchor_biosynthesis
N-Glycan_biosynthesis
endoplasmic reticulum membrane,
membrane coat,
microtubule associated complex,
coexpression networkCFinderM001355STE_STE20-YSK (from iTAK)
binding,
Glycosylphosphatidylinositol(GPI)-anchor_biosynthesis
RWP-RK Transcription_Regulator(from iTAK)
Nin-like Transcription_Regulator(from PlantTFDB)
endoplasmic reticulum membrane,
membrane coat,
regulation of ARF protein signal transduction,
GPI anchor biosynthetic process,
microtubule associated complex,
ARF guanyl-nucleotide exchange factor activity,
coexpression networkCFinderM001356STE_STE20-YSK (from iTAK)
binding,
Glycosylphosphatidylinositol(GPI)-anchor_biosynthesis
GPI anchor metabolic process,
regulation of Rab GTPase activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00225.22Kinesin79419
PF00514.22Arm685722

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003777microtubule motor activity
GO:0005488binding
GO:0005515protein binding
GO:0005524ATP binding
GO:0005875microtubule associated complex
GO:0007018microtubule-based movement

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.