PH01000407G0260's details annotation
1.Annotation
ICBR annotation: HAD superfamily phosphatase, putative, expressed
Blast result AT5G51260 : 1.60E-84
Blast annotation: HAD superfamily, subfamily IIIB acid phosphatase
2.Location
Scaffold: PH01000407
Strand: +
| Region | Start | End |
| gene | 194467 | 197711 |
| mRNA | 194467 | 197711 |
| exon | 194467 | 196272 |
| exon | 196421 | 196630 |
| exon | 197316 | 197711 |
| CDS | 195854 | 196272 |
| CDS | 196421 | 196630 |
| CDS | 197316 | 197493 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000188 | ubiquitin-dependent protein catabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03767.13 | Acid_phosphat_B | 49 | 267 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003993 | acid phosphatase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.