PH01000407G0350's details annotation
1.Annotation
ICBR annotation: peptidase, T1 family, putative, expressed
Blast result AT4G31300 : 1.40E-30
Blast annotation: N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
2.Location
Scaffold: PH01000407
Strand: -
| Region | Start | End |
| gene | 246713 | 248393 |
| mRNA | 246713 | 248393 |
| exon | 246713 | 247187 |
| exon | 247244 | 247299 |
| exon | 247743 | 247819 |
| exon | 247985 | 248393 |
| CDS | 246827 | 247187 |
| CDS | 247244 | 247299 |
| CDS | 247743 | 247819 |
| CDS | 247985 | 248120 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00227.25 | Proteasome | 22 | 90 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0004298 | threonine-type endopeptidase activity |
| GO:0005839 | proteasome core complex |
| GO:0051603 | proteolysis involved in cellular protein catabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.