PH01000408G0010's details annotation
1.Annotation
ICBR annotation: outer mitochondrial membrane porin, putative, expressed
Blast result AT5G67500 : 3.70E-90
Blast annotation: voltage dependent anion channel 2
2.Location
Scaffold: PH01000408
Strand: -
| Region | Start | End |
| gene | 1971 | 7862 |
| mRNA | 1971 | 7862 |
| exon | 1971 | 2958 |
| exon | 3059 | 3267 |
| exon | 3339 | 3425 |
| exon | 3501 | 3611 |
| exon | 5802 | 5869 |
| exon | 5954 | 7862 |
| CDS | 2652 | 2958 |
| CDS | 3059 | 3267 |
| CDS | 3339 | 3425 |
| CDS | 3501 | 3611 |
| CDS | 5802 | 5869 |
| CDS | 5954 | 6005 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000621 | glycolysis, fructose-bisphosphate aldolase activity, Pentose_phosphate_pathway Fructose_and_mannose_metabolism Carbon_fixation_in_photosynthetic_organisms Glycolysis_/_Gluconeogenesis Methane_metabolism DDT Transcription_Regulator(from iTAK) mitochondrial outer membrane, regulation_of_anion_transport anion transport, voltage-gated anion channel activity, catalytic activity, pyruvate kinase activity, potassium ion binding, |
| coexpression network | CFinderM001766 | proton-transporting ATP synthase complex, catalytic core F(1), mitochondrial proton-transporting ATP synthase complex, catalytic core F(1), proton-transporting two-sector ATPase complex, catalytic domain, mitochondrial outer membrane, ATP metabolic process, anion transport, ATP biosynthetic process, ATP_catabolic_process regulation_of_anion_transport proton transport, ATP synthesis coupled proton transport, fructose-bisphosphate aldolase activity, voltage-gated anion channel activity, ATP hydrolysis coupled proton transport, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, hydrogen ion transporting ATP synthase activity, rotational mechanism, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01459.21 | Porin_3 | 6 | 270 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005741 | mitochondrial outer membrane |
| GO:0006820 | anion transport |
| GO:0008308 | voltage-gated anion channel activity |
| GO:0044070 | regulation of anion transport |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.