Annotation of co-expression genes

PH01000408G0180's details annotation

1.Annotation

ICBR annotation: calcium-transporting ATPase, plasma membrane-type, putative, expressed

Blast result AT4G37640 : 0.00E+00
Blast annotation: calcium ATPase 2

2.Location

Scaffold: PH01000408
Strand: +

RegionStartEnd
gene118504125042
mRNA118504125042
exon118504118757
exon120255120309
exon120384122335
exon122422122580
exon122876123047
exon123421123719
exon124194124283
exon124677125042
CDS118581118757
CDS120255120309
CDS120384122335
CDS122422122580
CDS122876123047
CDS123421123719
CDS124194124283
CDS124677124862

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF12515.7CaATP_NAI550
PF00690.25Cation_ATPase_N118186
PF00122.19E1-E2_ATPase237432
PF13246.5Cation_ATPase516593
PF00702.25Hydrolase652770
PF00689.20Cation_ATPase_C8411025

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0005388calcium-transporting ATPase activity
GO:0005516calmodulin binding
GO:0005524ATP binding
GO:0006812cation transport
GO:0016020membrane
GO:0016021integral to membrane
GO:0019829cation-transporting ATPase activity
GO:0046872metal ion binding
GO:0070588calcium ion transmembrane transport

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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