PH01000409G0080's details annotation
1.Annotation
ICBR annotation: cyclic nucleotide-gated ion channel, putative, expressed
Blast result AT2G28260 : 4.00E-161
Blast annotation: cyclic nucleotide-gated channel 15
2.Location
Scaffold: PH01000409
Strand: +
| Region | Start | End |
| gene | 75208 | 78902 |
| mRNA | 75208 | 78902 |
| exon | 75208 | 76859 |
| exon | 77255 | 77554 |
| exon | 77647 | 77758 |
| exon | 77841 | 78077 |
| exon | 78158 | 78902 |
| CDS | 76774 | 76859 |
| CDS | 77255 | 77554 |
| CDS | 77647 | 77758 |
| CDS | 77841 | 78077 |
| CDS | 78158 | 78766 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000391 | translation release factor activity, translation release factor activity, codon specific, potassium ion transport, translational termination, malate_transport solute:hydrogen antiporter activity, transmembrane transport, integral to membrane, |
| coexpression network | CFinderM000392 | malate_transport Peroxisome Glyoxylate_and_dicarboxylate_metabolism glycopeptide_alpha-N-acetylgalactosaminidase_activity serine-type carboxypeptidase activity, FMN binding, |
| coexpression network | CFinderM000482 | translation release factor activity, translation release factor activity, codon specific, translational termination, translational initiation, translation initiation factor activity, |
| coexpression network | CFinderM000676 | TKL-Pl-4 (from iTAK) integral_component_of_peroxisomal_membrane peroxisome_fission translational initiation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00520.30 | Ion_trans | 33 | 174 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.