PH01000409G0280's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G42300 : 1.30E-17
Blast annotation: ubiquitin-like protein 5
2.Location
Scaffold: PH01000409
Strand: -
| Region | Start | End |
| gene | 216766 | 217950 |
| mRNA | 216766 | 217950 |
| exon | 216766 | 217265 |
| exon | 217414 | 217950 |
| CDS | 217176 | 217265 |
| CDS | 217414 | 217569 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000336 | C2C2-LSD Transcription_Regulator(from iTAK) LSD Transcription_Regulator(from PlantTFDB) cellulose biosynthetic process, MYB_related Transcription_Regulator(from PlantTFDB) MYB-related Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.