PH01000410G0380's details annotation
1.Annotation
ICBR annotation: cleavage and polyadenylation specificity factor, putative, expressed
Blast result AT4G05420 : 4.40E-73
Blast annotation: damaged DNA binding protein 1A
2.Location
Scaffold: PH01000410
Strand: +
| Region | Start | End |
| gene | 232440 | 237307 |
| mRNA | 232440 | 237307 |
| exon | 232440 | 232731 |
| exon | 233934 | 233982 |
| exon | 234107 | 234166 |
| exon | 234217 | 234398 |
| exon | 234826 | 234877 |
| exon | 235056 | 235118 |
| exon | 235261 | 235310 |
| exon | 235862 | 235937 |
| exon | 236105 | 236150 |
| exon | 236714 | 237307 |
| CDS | 232523 | 232731 |
| CDS | 233934 | 233982 |
| CDS | 234107 | 234166 |
| CDS | 234217 | 234398 |
| CDS | 234826 | 234877 |
| CDS | 235056 | 235118 |
| CDS | 235261 | 235310 |
| CDS | 235862 | 235937 |
| CDS | 236105 | 236150 |
| CDS | 236714 | 236901 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000781 | spliceosomal complex, GPI anchor metabolic process, mitosis, Spliceosome |
| coexpression network | CFinderM001176 | 6-phosphofructokinase complex, amino acid binding, 6-phosphofructokinase activity, glycolysis, |
| coexpression network | CFinderM001177 | MED6 Transcription_Regulator(from iTAK) mediator complex, regulation of transcription from RNA polymerase II promoter, metabolic process, Ether_lipid_metabolism Glycerophospholipid_metabolism Endocytosis |
| coexpression network | CFinderM001559 | GT22 GlycosylTransferases intrinsic to endoplasmic reticulum membrane, GPI anchor metabolic process, GPI anchor biosynthetic process, N-Glycan_biosynthesis Various_types_of_N-glycan_biosynthesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10433.8 | MMS1_N | 125 | 292 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.