PH01000410G0480's details annotation
1.Annotation
ICBR annotation: protein phosphatase 2C, putative, expressed
Blast result AT5G57050 : 5.90E-50
Blast annotation: Protein phosphatase 2C family protein
2.Location
Scaffold: PH01000410
Strand: -
| Region | Start | End |
| gene | 304821 | 307682 |
| mRNA | 304821 | 307682 |
| exon | 304821 | 305183 |
| exon | 306256 | 306361 |
| exon | 306455 | 307682 |
| CDS | 304843 | 305183 |
| CDS | 306256 | 306361 |
| CDS | 306455 | 306742 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000997 | oligosaccharide metabolic process, GH63 Glycoside_Hydrolases cell wall, cell wall modification, mannosyl-oligosaccharide glucosidase activity, CE8 Carbohydrate_Esterases N-Glycan_biosynthesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00481.20 | PP2C | 96 | 227 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.