PH01000410G1060's details annotation
1.Annotation
ICBR annotation: N-rich protein, putative, expressed
Blast result AT5G42050 : 2.00E-68
Blast annotation: DCD (Development and Cell Death) domain protein
2.Location
Scaffold: PH01000410
Strand: -
| Region | Start | End |
| gene | 681062 | 684296 |
| mRNA | 681062 | 684296 |
| exon | 681062 | 682164 |
| exon | 682725 | 682909 |
| exon | 683098 | 684296 |
| CDS | 682009 | 682164 |
| CDS | 682725 | 682909 |
| CDS | 683098 | 683776 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001539 | protein methylation, |
| coexpression network | CFinderM001765 | RLK-Pelle_WAK_LRK10L-1 (from iTAK) Steroid_biosynthesis oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10539.8 | Dev_Cell_Death | 206 | 333 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.