PH01000410G1090's details annotation
1.Annotation
ICBR annotation: sodium/calcium exchanger protein, putative, expressed
Blast result AT3G51860 : 7.50E-78
Blast annotation: cation exchanger 3
2.Location
Scaffold: PH01000410
Strand: -
| Region | Start | End |
| gene | 708640 | 714493 |
| mRNA | 708640 | 714493 |
| exon | 708640 | 709562 |
| exon | 709652 | 709742 |
| exon | 710011 | 710127 |
| exon | 711109 | 711240 |
| exon | 711329 | 711550 |
| exon | 711652 | 711848 |
| exon | 711929 | 711957 |
| exon | 712054 | 712121 |
| exon | 713746 | 714493 |
| CDS | 709507 | 709562 |
| CDS | 709652 | 709742 |
| CDS | 710011 | 710127 |
| CDS | 711109 | 711240 |
| CDS | 711329 | 711550 |
| CDS | 711652 | 711848 |
| CDS | 711929 | 711957 |
| CDS | 712054 | 712121 |
| CDS | 713746 | 714000 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01699.23 | Na_Ca_ex | 86 | 246 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016021 | integral to membrane |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.