Annotation of co-expression genes

PH01000411G0240's details annotation

1.Annotation

ICBR annotation: RNA recognition motif containing protein, putative, expressed

Blast result AT3G12640 : 5.40E-57
Blast annotation: RNA binding (RRM/RBD/RNP motifs) family protein

2.Location

Scaffold: PH01000411
Strand: -

RegionStartEnd
gene200902212658
mRNA200902212658
exon200902201319
exon201693201780
exon202548202772
exon204604204710
exon204793204860
exon205020205071
exon206779207621
exon208426208804
exon209495209595
exon212291212658
CDS201050201319
CDS201693201780
CDS202548202772
CDS204604204710
CDS204793204860
CDS205020205071
CDS206779207621
CDS208426208804
CDS209495209595
CDS212291212425

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000262Ribosome
translation,
structural constituent of ribosome,
proton-transporting ATP synthase complex assembly,
intracellular,
signal peptidase complex,
signal peptide processing,
mRNA processing,
Ribosome
peptidase activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01480.16PWI2484
PF00076.21RRM_1522563

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0006397mRNA processing

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.