PH01000411G0940's details annotation
1.Annotation
ICBR annotation: EDM2, putative, expressed
Blast result AT5G55390 : 1.10E-49
Blast annotation: ENHANCED DOWNY MILDEW 2
2.Location
Scaffold: PH01000411
Strand: +
| Region | Start | End |
| gene | 641364 | 646516 |
| mRNA | 641364 | 646516 |
| exon | 641364 | 642220 |
| exon | 642903 | 642981 |
| exon | 643350 | 643597 |
| exon | 643714 | 643812 |
| exon | 643894 | 644033 |
| exon | 644115 | 644250 |
| exon | 645016 | 645157 |
| exon | 645226 | 645327 |
| exon | 645624 | 645716 |
| exon | 646047 | 646516 |
| CDS | 642138 | 642220 |
| CDS | 642903 | 642981 |
| CDS | 643350 | 643597 |
| CDS | 643714 | 643812 |
| CDS | 643894 | 644033 |
| CDS | 644115 | 644250 |
| CDS | 645016 | 645157 |
| CDS | 645226 | 645327 |
| CDS | 645624 | 645716 |
| CDS | 646047 | 646058 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000645 | SET Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM000671 | SET Transcription_Regulator(from iTAK) DNA repair, Base_excision_repair nuclease activity, Ubiquitin_mediated_proteolysis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.