Annotation of co-expression genes

PH01000414G0400's details annotation

1.Annotation

ICBR annotation: NLI interacting factor-like phosphatase, putative, expressed

Blast result AT5G58003 : 9.00E-121
Blast annotation: C-terminal domain phosphatase-like 4

2.Location

Scaffold: PH01000414
Strand: -

RegionStartEnd
gene273085279153
mRNA273085279153
exon273085273652
exon274382274420
exon274569274757
exon275122275411
exon275661275841
exon276119276246
exon276280276374
exon277012277084
exon277274277347
exon277676277729
exon278598279153
CDS273290273652
CDS274382274420
CDS274569274757
CDS275122275411
CDS275661275841
CDS276119276246
CDS276280276374
CDS277012277084
CDS277274277347
CDS277676277729
CDS278598278917

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001636GPI anchor metabolic process,
double-strand break repair,
protein folding,
nucleus,
DNA metabolic process,
exonuclease activity,
endonuclease activity,
phosphoprotein phosphatase activity,
manganese ion binding,
peptidyl-prolyl cis-trans isomerase activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03031.17NIF275421
PF00533.25BRCT488562

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004721phosphoprotein phosphatase activity
GO:0005515protein binding
GO:0005634nucleus

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.