PH01000414G0650's details annotation
1.Annotation
ICBR annotation: zinc finger, C3HC4 type domain containing protein, expressed
Blast result AT5G45290 : 4.40E-71
Blast annotation: RING/U-box superfamily protein
2.Location
Scaffold: PH01000414
Strand: -
| Region | Start | End |
| gene | 459094 | 465426 |
| mRNA | 459094 | 465426 |
| exon | 459094 | 459585 |
| exon | 459660 | 459715 |
| exon | 459816 | 459970 |
| exon | 460134 | 461189 |
| exon | 461686 | 465426 |
| CDS | 459473 | 459585 |
| CDS | 459660 | 459715 |
| CDS | 459816 | 459970 |
| CDS | 460134 | 461189 |
| CDS | 461686 | 461865 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000922 | Endocytosis hydrolase_activity,_acting_on_acid_anhydrides |
| coexpression network | CFinderM001397 | GT4 GlycosylTransferases |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13639.5 | zf-RING_2 | 464 | 507 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.