PH01000415G0530's details annotation
1.Annotation
ICBR annotation: short-chain dehydrogenase/reductase, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000415
Strand: -
| Region | Start | End |
| gene | 367589 | 371444 |
| mRNA | 367589 | 371444 |
| exon | 367589 | 367751 |
| exon | 368064 | 368283 |
| exon | 370067 | 370267 |
| exon | 370650 | 370704 |
| exon | 370754 | 370998 |
| exon | 371078 | 371444 |
| CDS | 367716 | 367751 |
| CDS | 368064 | 368283 |
| CDS | 370067 | 370267 |
| CDS | 370650 | 370704 |
| CDS | 370754 | 370998 |
| CDS | 371078 | 371199 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001142 | |
| coexpression network | CFinderM001249 | glycerol ether metabolic process, cell redox homeostasis, protein disulfide oxidoreductase activity, electron carrier activity, Protein_processing_in_endoplasmic_reticulum |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00106.24 | adh_short | 42 | 123 |
| PF00106.24 | adh_short | 238 | 280 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008152 | metabolic process |
| GO:0016491 | oxidoreductase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.