PH01000418G0090's details annotation
1.Annotation
ICBR annotation: OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed
Blast result AT1G10430 : 2.00E-171
Blast annotation: protein phosphatase 2A-2
2.Location
Scaffold: PH01000418
Strand: -
| Region | Start | End |
| gene | 48115 | 57406 |
| mRNA | 48115 | 57406 |
| exon | 48115 | 49125 |
| exon | 49688 | 49879 |
| exon | 50740 | 50817 |
| exon | 51963 | 52040 |
| exon | 52131 | 52239 |
| exon | 55777 | 55891 |
| exon | 56877 | 57406 |
| CDS | 48952 | 49125 |
| CDS | 49688 | 49879 |
| CDS | 50740 | 50817 |
| CDS | 51963 | 52040 |
| CDS | 52131 | 52239 |
| CDS | 55777 | 55891 |
| CDS | 56877 | 57129 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00149.27 | Metallophos | 48 | 239 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| mRNA surveillance pathway | protein phosphatase 2 (formerly 2A), catalytic subunit [EC:3.1.3.-] | ko03015 | K04382 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016787 | hydrolase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.