Annotation of co-expression genes

PH01000418G0440's details annotation

1.Annotation

ICBR annotation: beta-galactosidase precursor, putative, expressed

Blast result AT3G13750 : 0.00E+00
Blast annotation: beta galactosidase 1

2.Location

Scaffold: PH01000418
Strand: -

RegionStartEnd
gene266415270797
mRNA266415270797
exon266415266550
exon266796266998
exon267125267226
exon267312267422
exon267521267630
exon267730267839
exon267930268099
exon268187268351
exon268443268561
exon268701268788
exon268922269027
exon269136269224
exon269536269679
exon269817269909
exon270008270074
exon270202270410
exon270500270797
CDS266442266550
CDS266796266998
CDS267125267226
CDS267312267422
CDS267521267630
CDS267730267839
CDS267930268099
CDS268187268351
CDS268443268561
CDS268701268788
CDS268922269027
CDS269136269224
CDS269536269679
CDS269817269909
CDS270008270074
CDS270202270410
CDS270500270661

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings

Created with Highcharts 4.1.6Expression value (FPKM)gene expression profiling among different tissue samplesleaf_SRR2035212leaf_SRR2035327leaf_SRR4450543_CKleaf_SRR4450545_Dehydrationleaf_SRR4450547_Dehydrationleaf_SRR4450549_Coldleaf_SRR4450551_ColdLeaf-2Leaf_ERR105068Root_1Root_3Root_5Root_ERR105075RhizomeRhizome_ERR105074culm_SRR1187864shoot_SAM_Ashoot_MIN_Cshoot_YNO_Ashoot_YNO_Cshoot_MNO_Ashoot_MNO_Cshoot_SAM_Cshoot_YIN_Ashoot_YIN_Cshoot_MIN_Ashoot_SRR3050072shoot_SRR3056056shoot_SRR3521411Shoot_A2Shoot_B1Shoot_B3Shoot_C2Shoot_D1Shoot_D3Bud_1Bud_3panicle_early_ERR105069panicle_flowering_ERR1050710100200300400500600700800900100011001200Highcharts.com

7.Gene family

CategoryFamily
Glycoside_HydrolasesGH35

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01301.18Glyco_hydro_3531336

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005975carbohydrate metabolic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.