PH01000420G0920's details annotation
1.Annotation
ICBR annotation: nucleobase-ascorbate transporter, putative, expressed
Blast result AT5G62890 : 0.00E+00
Blast annotation: Xanthine/uracil permease family protein
2.Location
Scaffold: PH01000420
Strand: +
| Region | Start | End |
| gene | 663036 | 669526 |
| mRNA | 663036 | 669526 |
| exon | 663036 | 664946 |
| exon | 665172 | 665269 |
| exon | 665453 | 665629 |
| exon | 665720 | 665820 |
| exon | 665958 | 666033 |
| exon | 666164 | 666223 |
| exon | 666310 | 666494 |
| exon | 666581 | 666677 |
| exon | 666773 | 666859 |
| exon | 666951 | 667009 |
| exon | 667161 | 667252 |
| exon | 667549 | 667626 |
| exon | 667729 | 667889 |
| exon | 667981 | 669526 |
| CDS | 664835 | 664946 |
| CDS | 665172 | 665269 |
| CDS | 665453 | 665629 |
| CDS | 665720 | 665820 |
| CDS | 665958 | 666033 |
| CDS | 666164 | 666223 |
| CDS | 666310 | 666494 |
| CDS | 666581 | 666677 |
| CDS | 666773 | 666859 |
| CDS | 666951 | 667009 |
| CDS | 667161 | 667252 |
| CDS | 667549 | 667626 |
| CDS | 667729 | 667889 |
| CDS | 667981 | 668199 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00860.19 | Xan_ur_permease | 39 | 443 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005215 | transporter activity |
| GO:0006810 | transport |
| GO:0016020 | membrane |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.