PH01000423G0790's details annotation
1.Annotation
ICBR annotation: tRNA methyltran, putative, expressed
Blast result AT1G16445 : 2.30E-68
Blast annotation: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
2.Location
Scaffold: PH01000423
Strand: +
| Region | Start | End |
| gene | 535746 | 539873 |
| mRNA | 535746 | 539873 |
| exon | 535746 | 537221 |
| exon | 537352 | 537415 |
| exon | 538191 | 538383 |
| exon | 538698 | 538771 |
| exon | 538915 | 539070 |
| exon | 539336 | 539873 |
| CDS | 537026 | 537221 |
| CDS | 537352 | 537415 |
| CDS | 538191 | 538383 |
| CDS | 538698 | 538771 |
| CDS | 538915 | 539070 |
| CDS | 539336 | 539459 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06962.11 | rRNA_methylase | 126 | 265 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.