PH01000424G0770's details annotation
1.Annotation
ICBR annotation: GPI transamidase component Gpi16 subunit family protein, putative, expressed
Blast result AT3G07140 : 0.00E+00
Blast annotation: GPI transamidase component Gpi16 subunit family protein
2.Location
Scaffold: PH01000424
Strand: -
| Region | Start | End |
| gene | 455345 | 460052 |
| mRNA | 455345 | 460052 |
| exon | 455345 | 455401 |
| exon | 455988 | 456168 |
| exon | 456294 | 456443 |
| exon | 456637 | 457830 |
| exon | 459289 | 460052 |
| CDS | 455379 | 455401 |
| CDS | 455988 | 456168 |
| CDS | 456294 | 456443 |
| CDS | 456637 | 457830 |
| CDS | 459289 | 459522 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000862 | DBP Transcription_Regulator(from iTAK) Golgi stack, GPI-anchor transamidase complex, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04113.13 | Gpi16 | 21 | 585 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Glycosylphosphatidylinositol(GPI)-anchor biosynthesis | phosphatidylinositol glycan, class T | ko00563 | K05292 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016255 | attachment of GPI anchor to protein |
| GO:0042765 | GPI-anchor transamidase complex |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.