PH01000425G0820's details annotation
1.Annotation
ICBR annotation: CDP-alcohol phosphatidyltransferase, putative, expressed
Blast result AT4G04870 : 6.10E-70
Blast annotation: cardiolipin synthase
2.Location
Scaffold: PH01000425
Strand: -
| Region | Start | End |
| gene | 553026 | 558631 |
| mRNA | 553026 | 558631 |
| exon | 553026 | 553741 |
| exon | 554069 | 554163 |
| exon | 554246 | 554320 |
| exon | 554399 | 554484 |
| exon | 554763 | 554814 |
| exon | 554905 | 554979 |
| exon | 555061 | 555127 |
| exon | 556399 | 558631 |
| CDS | 553663 | 553741 |
| CDS | 554069 | 554163 |
| CDS | 554246 | 554320 |
| CDS | 554399 | 554484 |
| CDS | 554763 | 554814 |
| CDS | 554905 | 554979 |
| CDS | 555061 | 555127 |
| CDS | 556399 | 556460 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01066.20 | CDP-OH_P_transf | 27 | 67 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Glycerophospholipid metabolism | cardiolipin synthase [EC:2.7.8.-] | ko00564 | K08744 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008654 | phospholipid biosynthetic process |
| GO:0016020 | membrane |
| GO:0016780 | phosphotransferase activity, for other substituted phosphate groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.