PH01000426G0260's details annotation
1.Annotation
ICBR annotation: lipoxygenase, putative, expressed
Blast result AT1G55020 : 0.00E+00
Blast annotation: lipoxygenase 1
2.Location
Scaffold: PH01000426
Strand: +
| Region | Start | End |
| gene | 178331 | 183448 |
| mRNA | 178331 | 183448 |
| exon | 178331 | 178646 |
| exon | 179060 | 179352 |
| exon | 180315 | 180552 |
| exon | 180796 | 181131 |
| exon | 181242 | 181327 |
| exon | 181424 | 181531 |
| exon | 181670 | 181977 |
| exon | 182134 | 182397 |
| exon | 182496 | 182604 |
| exon | 182704 | 183448 |
| CDS | 178460 | 178646 |
| CDS | 179060 | 179352 |
| CDS | 180315 | 180552 |
| CDS | 180796 | 181131 |
| CDS | 181242 | 181327 |
| CDS | 181424 | 181531 |
| CDS | 181670 | 181977 |
| CDS | 182134 | 182397 |
| CDS | 182496 | 182604 |
| CDS | 182704 | 183318 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000066 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, Linoleic_acid_metabolism iron ion binding, metal ion binding, oxidation-reduction process, MYB Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001043 | lipoxygenase activity, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, Linoleic_acid_metabolism iron ion binding, metal ion binding, MYB Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001075 | SET Transcription_Regulator(from iTAK) histone_lysine_methylation Linoleic_acid_metabolism Lysine_degradation Cysteine_and_methionine_metabolism lipoxygenase activity, histone_binding histone-lysine N-methyltransferase activity, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, oxidation-reduction process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01477.22 | PLAT | 55 | 157 |
| PF00305.18 | Lipoxygenase | 170 | 824 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Linoleic acid metabolism | linoleate 9S-lipoxygenase [EC:1.13.11.58] | ko00591 | K15718 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005506 | iron ion binding |
| GO:0005515 | protein binding |
| GO:0016165 | lipoxygenase activity |
| GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen |
| GO:0046872 | metal ion binding |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.