PH01000426G0350's details annotation
1.Annotation
ICBR annotation: ethylene-insensitive protein, putative, expressed
Blast result AT5G03280 : 0.00E+00
Blast annotation: NRAMP metal ion transporter family protein
2.Location
Scaffold: PH01000426
Strand: +
| Region | Start | End |
| gene | 235079 | 243556 |
| mRNA | 235079 | 243556 |
| exon | 235079 | 236975 |
| exon | 237332 | 237418 |
| exon | 237569 | 237682 |
| exon | 237779 | 237991 |
| exon | 239894 | 241711 |
| exon | 241751 | 242488 |
| exon | 243063 | 243556 |
| CDS | 236724 | 236975 |
| CDS | 237332 | 237418 |
| CDS | 237569 | 237682 |
| CDS | 237779 | 237991 |
| CDS | 239894 | 241711 |
| CDS | 241751 | 242488 |
| CDS | 243063 | 243344 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01566.17 | Nramp | 39 | 222 |
| PF01566.17 | Nramp | 226 | 331 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Plant hormone signal transduction | ethylene-insensitive protein 2 | ko04075 | K14513 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005215 | transporter activity |
| GO:0006810 | transport |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.