PH01000426G0830's details annotation
1.Annotation
ICBR annotation: phosphatidylinositol-4-phosphate 5-kinase, putative, expressed
Blast result AT1G60890 : 8.00E-127
Blast annotation: Phosphatidylinositol-4-phosphate 5-kinase family protein
2.Location
Scaffold: PH01000426
Strand: +
| Region | Start | End |
| gene | 509448 | 513310 |
| mRNA | 509448 | 513310 |
| exon | 509448 | 509827 |
| exon | 510459 | 510624 |
| exon | 510852 | 510962 |
| exon | 511048 | 511235 |
| exon | 511807 | 511961 |
| exon | 512194 | 512359 |
| exon | 512981 | 513310 |
| CDS | 509817 | 509827 |
| CDS | 510459 | 510624 |
| CDS | 510852 | 510962 |
| CDS | 511048 | 511235 |
| CDS | 511807 | 511961 |
| CDS | 512194 | 512359 |
| CDS | 512981 | 513257 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000873 | GH47 Glycoside_Hydrolases AGC_NDR (from iTAK) thiol oxidase activity, N-Glycan_biosynthesis Various_types_of_N-glycan_biosynthesis mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01504.17 | PIP5K | 25 | 350 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016307 | phosphatidylinositol phosphate kinase activity |
| GO:0046488 | phosphatidylinositol metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.