PH01000427G0550's details annotation
1.Annotation
ICBR annotation: TBC domain containing protein, expressed
Blast result AT3G49350 : 9.00E-136
Blast annotation: Ypt/Rab-GAP domain of gyp1p superfamily protein
2.Location
Scaffold: PH01000427
Strand: -
| Region | Start | End |
| gene | 410501 | 419544 |
| mRNA | 410501 | 419544 |
| exon | 410501 | 412963 |
| exon | 413151 | 413204 |
| exon | 413702 | 413782 |
| exon | 414786 | 414835 |
| exon | 415935 | 416213 |
| exon | 416914 | 416993 |
| exon | 418745 | 419544 |
| CDS | 411730 | 412963 |
| CDS | 413151 | 413204 |
| CDS | 413702 | 413782 |
| CDS | 414786 | 414835 |
| CDS | 415935 | 416213 |
| CDS | 416914 | 416993 |
| CDS | 418745 | 418961 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00566.17 | RabGAP-TBC | 460 | 582 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005097 | Rab GTPase activator activity |
| GO:0005622 | intracellular |
| GO:0032313 | regulation of Rab GTPase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.