PH01000428G0610's details annotation
1.Annotation
ICBR annotation: tetraspanin family protein, putative, expressed
Blast result AT3G45600 : 1.40E-84
Blast annotation: tetraspanin3
2.Location
Scaffold: PH01000428
Strand: -
| Region | Start | End |
| gene | 418967 | 423297 |
| mRNA | 418967 | 423297 |
| exon | 418967 | 419540 |
| exon | 421164 | 421211 |
| exon | 422118 | 423297 |
| CDS | 419190 | 419540 |
| CDS | 421164 | 421211 |
| CDS | 422118 | 422651 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00335.19 | Tetraspannin | 8 | 280 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.