PH01000430G0360's details annotation
1.Annotation
ICBR annotation: endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed
Blast result AT1G22200 : 2.00E-86
Blast annotation: Endoplasmic reticulum vesicle transporter protein
2.Location
Scaffold: PH01000430
Strand: -
| Region | Start | End |
| gene | 212299 | 218626 |
| mRNA | 212299 | 218626 |
| exon | 212299 | 212765 |
| exon | 212918 | 212984 |
| exon | 213299 | 213388 |
| exon | 213464 | 213517 |
| exon | 213638 | 213772 |
| exon | 215042 | 215134 |
| exon | 215318 | 215398 |
| exon | 216148 | 216228 |
| exon | 216350 | 216433 |
| exon | 216975 | 217001 |
| exon | 217531 | 217553 |
| exon | 218320 | 218626 |
| CDS | 212674 | 212765 |
| CDS | 212918 | 212984 |
| CDS | 213299 | 213388 |
| CDS | 213464 | 213517 |
| CDS | 213638 | 213772 |
| CDS | 215042 | 215134 |
| CDS | 215318 | 215398 |
| CDS | 216148 | 216228 |
| CDS | 216350 | 216433 |
| CDS | 216975 | 217001 |
| CDS | 217531 | 217553 |
| CDS | 218320 | 218458 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000685 | vacuolar proton-transporting V-type ATPase complex, prefoldin complex, RLK-Pelle_L-LEC (from iTAK) Phagosome Oxidative_phosphorylation proton transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13850.5 | ERGIC_N | 7 | 88 |
| PF07970.11 | COPIIcoated_ERV | 140 | 176 |
| PF07970.11 | COPIIcoated_ERV | 186 | 301 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.