PH01000430G0510's details annotation
1.Annotation
ICBR annotation: OsWRKY55 - Superfamily of TFs having WRKY and zinc finger domains, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000430
Strand: +
| Region | Start | End |
| gene | 303005 | 304934 |
| mRNA | 303005 | 304934 |
| exon | 303005 | 303609 |
| exon | 303716 | 303820 |
| exon | 304104 | 304934 |
| CDS | 303557 | 303609 |
| CDS | 303716 | 303820 |
| CDS | 304104 | 304578 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | WRKY |
| Transcription_Regulator(from PlantTFDB) | WRKY |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03106.14 | WRKY | 33 | 93 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.