PH01000430G0720's details annotation
1.Annotation
ICBR annotation: ELMO/CED-12 family protein, putative, expressed
Blast result AT3G03610 : 1.00E-121
Blast annotation: ELMO/CED-12 family protein
2.Location
Scaffold: PH01000430
Strand: +
| Region | Start | End |
| gene | 411414 | 417512 |
| mRNA | 411414 | 417512 |
| exon | 411414 | 411622 |
| exon | 412588 | 412685 |
| exon | 412757 | 412825 |
| exon | 412932 | 413047 |
| exon | 413152 | 413206 |
| exon | 413298 | 413418 |
| exon | 416902 | 417044 |
| exon | 417152 | 417512 |
| CDS | 411487 | 411622 |
| CDS | 412588 | 412685 |
| CDS | 412757 | 412825 |
| CDS | 412932 | 413047 |
| CDS | 413152 | 413206 |
| CDS | 413298 | 413418 |
| CDS | 416902 | 417044 |
| CDS | 417152 | 417253 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000315 | AGC_NDR (from iTAK) Jumonji Transcription_Regulator(from iTAK) phagocytosis, phosphorylation, cytoskeleton, Spliceosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04727.12 | ELMO_CED12 | 122 | 287 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005856 | cytoskeleton |
| GO:0006909 | phagocytosis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.