PH01000431G0220's details annotation
1.Annotation
ICBR annotation: metal cation transporter, putative, expressed
Blast result AT2G30080 : 7.10E-63
Blast annotation: ZIP metal ion transporter family
2.Location
Scaffold: PH01000431
Strand: -
| Region | Start | End |
| gene | 142453 | 148749 |
| mRNA | 142453 | 148749 |
| exon | 142453 | 143452 |
| exon | 144866 | 148749 |
| CDS | 143138 | 143452 |
| CDS | 144866 | 145750 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000461 | STE_STE11 (from iTAK) zinc_ion_transmembrane_transport cellular component organization, actin cytoskeleton organization, |
| coexpression network | CFinderM000543 | GT1 GlycosylTransferases zinc ion transmembrane transporter activity, metal ion transmembrane transporter activity, zinc_ion_transmembrane_transport |
| coexpression network | CFinderM001211 | zinc ion transmembrane transporter activity, binding, metal ion transmembrane transporter activity, zinc_ion_transmembrane_transport cysteine-type peptidase activity, |
| coexpression network | CFinderM001673 | HAUS_complex RLK-Pelle_LRR-V (from iTAK) STE_STE11 (from iTAK) spindle_assembly zinc_ion_transmembrane_transport |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02535.21 | Zip | 29 | 396 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005385 | zinc ion transmembrane transporter activity |
| GO:0016020 | membrane |
| GO:0016021 | integral to membrane |
| GO:0030001 | metal ion transport |
| GO:0046873 | metal ion transmembrane transporter activity |
| GO:0055085 | transmembrane transport |
| GO:0071577 | zinc ion transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.