Annotation of co-expression genes

PH01000432G0210's details annotation

1.Annotation

ICBR annotation: inactive receptor kinase At1g27190 precursor, putative, expressed

Blast result AT1G51540 : 4.00E-103
Blast annotation: Galactose oxidase/kelch repeat superfamily protein

2.Location

Scaffold: PH01000432
Strand: -

RegionStartEnd
gene141650154806
mRNA141650154806
exon141650142952
exon143527143866
exon146678146757
exon147105147189
exon147659147792
exon148172148378
exon149330149593
exon151552151657
exon151976152146
exon152366152443
exon152486152595
exon153315153494
exon154511154806
CDS141972142952
CDS143527143866
CDS146678146757
CDS147105147189
CDS147659147792
CDS148172148378
CDS149330149593
CDS151552151657
CDS151976152146
CDS152366152443
CDS152486152595
CDS153315153494
CDS154511154717

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000096NF-X1 Transcription_Regulator(from PlantTFDB)
RLK-Pelle_LRR-Xa (from iTAK)
Endocytosis
GATA Transcription_Regulator(from PlantTFDB)
C2C2-GATA Transcription_Regulator(from iTAK)
GRAS Transcription_Regulator(from PlantTFDB)
vesicle docking involved in exocytosis,
coexpression networkCFinderM000138RLK-Pelle_LRR-Xa (from iTAK)
GRAS Transcription_Regulator(from PlantTFDB)
vesicle docking involved in exocytosis,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13418.5Kelch_4105151
PF08263.11LRRNT_2556598
PF07714.16Pkinase_Tyr695951

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0005515protein binding
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.