PH01000432G0260's details annotation
1.Annotation
ICBR annotation: Divergent PAP2 family domain containing protein, expressed
Blast result AT1G67600 : 3.90E-48
Blast annotation: Acid phosphatase/vanadium-dependent haloperoxidase-related protein
2.Location
Scaffold: PH01000432
Strand: -
| Region | Start | End |
| gene | 181396 | 187020 |
| mRNA | 181396 | 187020 |
| exon | 181396 | 181593 |
| exon | 182018 | 182110 |
| exon | 183053 | 183103 |
| exon | 183238 | 183399 |
| exon | 184860 | 184899 |
| exon | 185291 | 185338 |
| exon | 185756 | 185994 |
| exon | 186035 | 187020 |
| CDS | 181525 | 181593 |
| CDS | 182018 | 182110 |
| CDS | 183053 | 183103 |
| CDS | 183238 | 183399 |
| CDS | 184860 | 184899 |
| CDS | 185291 | 185338 |
| CDS | 185756 | 185994 |
| CDS | 186035 | 186340 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000718 | GH1 Glycoside_Hydrolases thylakoid membrane organization, photosystem II, Photosynthesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02681.13 | DUF212 | 214 | 323 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.