PH01000432G0600's details annotation
1.Annotation
ICBR annotation: cullin family domain containing protein, putative, expressed
Blast result AT2G04660 : 0.00E+00
Blast annotation: anaphase-promoting complex/cyclosome 2
2.Location
Scaffold: PH01000432
Strand: -
| Region | Start | End |
| gene | 403776 | 416180 |
| mRNA | 403776 | 416180 |
| exon | 403776 | 404029 |
| exon | 404344 | 404535 |
| exon | 404945 | 405026 |
| exon | 405094 | 405182 |
| exon | 405294 | 405413 |
| exon | 407206 | 407288 |
| exon | 407378 | 407492 |
| exon | 407623 | 407804 |
| exon | 407981 | 408095 |
| exon | 408226 | 408427 |
| exon | 408531 | 408947 |
| exon | 410263 | 410504 |
| exon | 411196 | 411267 |
| exon | 411380 | 411657 |
| exon | 411941 | 411980 |
| exon | 412399 | 412467 |
| exon | 412545 | 412733 |
| exon | 413245 | 413334 |
| exon | 415585 | 416180 |
| CDS | 403907 | 404029 |
| CDS | 404344 | 404535 |
| CDS | 404945 | 405026 |
| CDS | 405094 | 405182 |
| CDS | 405294 | 405413 |
| CDS | 407206 | 407288 |
| CDS | 407378 | 407492 |
| CDS | 407623 | 407804 |
| CDS | 407981 | 408095 |
| CDS | 408226 | 408427 |
| CDS | 408531 | 408947 |
| CDS | 410263 | 410504 |
| CDS | 411196 | 411267 |
| CDS | 411380 | 411657 |
| CDS | 411941 | 411980 |
| CDS | 412399 | 412467 |
| CDS | 412545 | 412733 |
| CDS | 413245 | 413334 |
| CDS | 415585 | 415767 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00888.21 | Cullin | 647 | 852 |
| PF08672.10 | ANAPC2 | 918 | 957 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ubiquitin mediated proteolysis | anaphase-promoting complex subunit 2 | ko04120 | K03349 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006511 | ubiquitin-dependent protein catabolic process |
| GO:0031461 | cullin-RING ubiquitin ligase complex |
| GO:0031625 | ubiquitin protein ligase binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.