Annotation of co-expression genes

PH01000433G0680's details annotation

1.Annotation

ICBR annotation: protein phosphatase 2c, putative, expressed

Blast result AT5G01700 : 1.30E-68
Blast annotation: Protein phosphatase 2C family protein

2.Location

Scaffold: PH01000433
Strand: -

RegionStartEnd
gene408209414916
mRNA408209414916
exon408209408826
exon409650409961
exon411138411190
exon411859412043
exon412451412539
exon412864413087
exon413178413295
exon413798414139
exon414633414916
CDS408209408826
CDS409650409961
CDS411138411190
CDS411859412043
CDS412451412539
CDS412864413087
CDS413178413295
CDS413798414139
CDS414633414791

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000503

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00481.20PP2C32281
PF00999.20Na_H_Exchanger511668

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0006812cation transport
GO:0015299solute:hydrogen antiporter activity
GO:0016021integral to membrane
GO:0055085transmembrane transport

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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