Annotation of co-expression genes

PH01000433G0800's details annotation

1.Annotation

ICBR annotation: ferritin-1, chloroplast precursor, putative, expressed

Blast result AT2G40300 : 1.40E-75
Blast annotation: ferritin 4

2.Location

Scaffold: PH01000433
Strand: +

RegionStartEnd
gene490176496942
mRNA490176496942
exon490176493988
exon494787494870
exon494962495022
exon495127495214
exon496146496207
exon496359496424
exon496535496598
exon496696496942
CDS493693493988
CDS494787494870
CDS494962495022
CDS495127495214
CDS496146496207
CDS496359496424
CDS496535496598
CDS496696496742

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipphe-miR535a  
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00210.23Ferritin92236

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Porphyrin and chlorophyll metabolismferritin heavy chain [EC:1.16.3.1]ko00860K00522

10.Gene Ontology

GO AccessionGO Annotation
GO:0006826iron ion transport
GO:0006879cellular iron ion homeostasis
GO:0008199ferric iron binding
GO:0016491oxidoreductase activity
GO:0046914transition metal ion binding
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.