Annotation of co-expression genes

PH01000433G0870's details annotation

1.Annotation

ICBR annotation: MRH1, putative, expressed

Blast result AT5G45840 : 1.00E-124
Blast annotation: Leucine-rich repeat protein kinase family protein

2.Location

Scaffold: PH01000433
Strand: +

RegionStartEnd
gene539715545754
mRNA539715545754
exon539715540581
exon540658540799
exon542595542666
exon542901543044
exon543131543247
exon543816544174
exon544429544619
exon544725544857
exon544934545754
CDS540488540581
CDS540658540799
CDS542595542666
CDS542901543044
CDS543131543247
CDS543816544174
CDS544429544619
CDS544725544857
CDS544934545514

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF08263.11LRRNT_22971
PF07714.16Pkinase_Tyr337577

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0005515protein binding
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.