PH01000433G0890's details annotation
1.Annotation
ICBR annotation: MYB family transcription factor, putative, expressed
Blast result AT2G38300 : 5.50E-33
Blast annotation: myb-like HTH transcriptional regulator family protein
2.Location
Scaffold: PH01000433
Strand: +
| Region | Start | End |
| gene | 565469 | 567437 |
| mRNA | 565469 | 567437 |
| exon | 565469 | 565826 |
| exon | 565967 | 566043 |
| exon | 566176 | 566212 |
| exon | 566312 | 566435 |
| exon | 566582 | 567437 |
| CDS | 565556 | 565826 |
| CDS | 565967 | 566043 |
| CDS | 566176 | 566212 |
| CDS | 566312 | 566435 |
| CDS | 566582 | 567083 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001104 | RLK-Pelle_LRR-VI-2 (from iTAK) GARP-G2-like Transcription_Regulator(from iTAK) G2-like Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | GARP-G2-like |
| Transcription_Regulator(from PlantTFDB) | G2-like |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00249.30 | Myb_DNA-binding | 68 | 119 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003682 | chromatin binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.