PH01000433G0980's details annotation
1.Annotation
ICBR annotation: proteins of unknown function domain containing protein, expressed
Blast result AT3G55990 : 4.00E-128
Blast annotation: Plant protein of unknown function (DUF828)
2.Location
Scaffold: PH01000433
Strand: -
| Region | Start | End |
| gene | 625706 | 633526 |
| mRNA | 625706 | 633526 |
| exon | 625706 | 626972 |
| exon | 629154 | 629309 |
| exon | 629405 | 629776 |
| exon | 629874 | 630145 |
| exon | 632004 | 633526 |
| CDS | 626579 | 626972 |
| CDS | 629154 | 629309 |
| CDS | 629405 | 629776 |
| CDS | 629874 | 630145 |
| CDS | 632004 | 632108 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000975 | GTnc GlycosylTransferases tRNA (guanine-N1-)-methyltransferase activity, tRNA methylation, chitin catabolic process, cell wall macromolecule catabolic process, chaperone binding, chitinase activity, transferase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14416.5 | PMR5N | 70 | 122 |
| PF13839.5 | PC-Esterase | 124 | 412 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.