Annotation of co-expression genes

PH01000435G0260's details annotation

1.Annotation

ICBR annotation: glycosyl transferase 8 domain containing protein, putative, expressed

Blast result AT5G47780 : 0.00E+00
Blast annotation: galacturonosyltransferase 4

2.Location

Scaffold: PH01000435
Strand: +

RegionStartEnd
gene148281154030
mRNA148281154030
exon148281150229
exon150316150353
exon150445150489
exon150616150975
exon151552151823
exon151968152325
exon152450153025
exon153255153526
exon153793154030
CDS150094150229
CDS150316150353
CDS150445150489
CDS150616150975
CDS151552151823
CDS151968152325
CDS152450153025
CDS153255153526
CDS153793153820

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01501.19Glyco_transf_8348658

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Starch and sucrose metabolismalpha-1,4-galacturonosyltransferase [EC:2.4.1.43]ko00500K13648
Amino sugar and nucleotide sugar metabolismalpha-1,4-galacturonosyltransferase [EC:2.4.1.43]ko00520K13648

10.Gene Ontology

GO AccessionGO Annotation
GO:0016757transferase activity, transferring glycosyl groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.