Annotation of co-expression genes

PH01000436G0190's details annotation

1.Annotation

ICBR annotation: bZIP transcription factor domain containing protein, expressed

Blast result AT2G40950 : 2.60E-69
Blast annotation: Basic-leucine zipper (bZIP) transcription factor family protein

2.Location

Scaffold: PH01000436
Strand: -

RegionStartEnd
gene148758153222
mRNA148758153222
exon148758149346
exon150230151376
exon152638153222
CDS148904149346
CDS150230151376
CDS152638152691

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001054seryl-tRNA aminoacylation,
electron transport chain,
bZIP Transcription_Regulator(from PlantTFDB)
serine-tRNA ligase activity,
RNA metabolic process,
coexpression networkCFinderM001641bZIP Transcription_Regulator(from PlantTFDB)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)bZIP
Transcription_Regulator(from PlantTFDB)bZIP

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00170.20bZIP_195157

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003700sequence-specific DNA binding transcription factor activity
GO:0006355regulation of transcription, DNA-dependent
GO:0043565sequence-specific DNA binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.