PH01000436G0640's details annotation
1.Annotation
ICBR annotation: FGGY family of carbohydrate kinases, putative, expressed
Blast result AT5G49650 : 0.00E+00
Blast annotation: xylulose kinase-2
2.Location
Scaffold: PH01000436
Strand: -
| Region | Start | End |
| gene | 441201 | 446138 |
| mRNA | 441201 | 446138 |
| exon | 441201 | 441790 |
| exon | 441895 | 442069 |
| exon | 442150 | 442244 |
| exon | 442329 | 442382 |
| exon | 442614 | 442688 |
| exon | 442770 | 442890 |
| exon | 443009 | 443064 |
| exon | 443201 | 443265 |
| exon | 443734 | 443822 |
| exon | 443954 | 444650 |
| exon | 445972 | 446138 |
| CDS | 441546 | 441790 |
| CDS | 441895 | 442069 |
| CDS | 442150 | 442244 |
| CDS | 442329 | 442382 |
| CDS | 442614 | 442688 |
| CDS | 442770 | 442890 |
| CDS | 443009 | 443064 |
| CDS | 443201 | 443265 |
| CDS | 443734 | 443822 |
| CDS | 443954 | 444650 |
| CDS | 445972 | 446033 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00370.20 | FGGY_N | 154 | 303 |
| PF02782.15 | FGGY_C | 315 | 510 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Pentose and glucuronate interconversions | xylulokinase [EC:2.7.1.17] | ko00040 | K00854 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016773 | phosphotransferase activity, alcohol group as acceptor |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.