PH01000437G0190's details annotation
1.Annotation
ICBR annotation: bZIP transcription factor, putative, expressed
Blast result AT3G19290 : 5.70E-34
Blast annotation: ABRE binding factor 4
2.Location
Scaffold: PH01000437
Strand: +
| Region | Start | End |
| gene | 160270 | 167239 |
| mRNA | 160270 | 167239 |
| exon | 160270 | 162284 |
| exon | 164005 | 164076 |
| exon | 166628 | 167239 |
| CDS | 161448 | 162284 |
| CDS | 164005 | 164076 |
| CDS | 166628 | 166756 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | bZIP |
| Transcription_Regulator(from PlantTFDB) | bZIP |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00170.20 | bZIP_1 | 259 | 304 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Plant hormone signal transduction | ABA responsive element binding factor | ko04075 | K14432 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.