PH01000437G0700's details annotation
1.Annotation
ICBR annotation: peptidase, M24 family protein, putative, expressed
Blast result AT4G37040 : 2.00E-130
Blast annotation: methionine aminopeptidase 1D
2.Location
Scaffold: PH01000437
Strand: +
| Region | Start | End |
| gene | 476139 | 483445 |
| mRNA | 476139 | 483445 |
| exon | 476139 | 476988 |
| exon | 477092 | 477161 |
| exon | 478312 | 478540 |
| exon | 479124 | 479285 |
| exon | 479360 | 479401 |
| exon | 480813 | 480884 |
| exon | 481094 | 481173 |
| exon | 481750 | 481847 |
| exon | 482566 | 483445 |
| CDS | 476892 | 476988 |
| CDS | 477092 | 477161 |
| CDS | 478312 | 478540 |
| CDS | 479124 | 479285 |
| CDS | 479360 | 479401 |
| CDS | 480813 | 480884 |
| CDS | 481094 | 481173 |
| CDS | 481750 | 481847 |
| CDS | 482566 | 482711 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00557.23 | Peptidase_M24 | 111 | 322 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004177 | aminopeptidase activity |
| GO:0006508 | proteolysis |
| GO:0008235 | metalloexopeptidase activity |
| GO:0009987 | cellular process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.