PH01000438G0880's details annotation
1.Annotation
ICBR annotation: cleavage and polyadenylation specificity factor subunit 5, putative, expressed
Blast result AT4G25550 : 4.00E-101
Blast annotation: Cleavage/polyadenylation specificity factor, 25kDa subunit
2.Location
Scaffold: PH01000438
Strand: +
| Region | Start | End |
| gene | 651818 | 660046 |
| mRNA | 651818 | 660046 |
| exon | 651818 | 652674 |
| exon | 656007 | 656052 |
| exon | 656203 | 656296 |
| exon | 656415 | 656488 |
| exon | 658996 | 659082 |
| exon | 659171 | 659281 |
| exon | 659823 | 660046 |
| CDS | 652550 | 652674 |
| CDS | 656007 | 656052 |
| CDS | 656203 | 656296 |
| CDS | 656415 | 656488 |
| CDS | 658996 | 659082 |
| CDS | 659171 | 659281 |
| CDS | 659823 | 659894 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000919 | mRNA_cleavage_factor_complex mRNA_polyadenylation phytochelatin biosynthetic process, response to metal ion, nitrogen compound metabolic process, Styrene_degradation Regulation_of_autophagy Aminobenzoate_degradation Tryptophan_metabolism Cyanoamino_acid_metabolism glutathione gamma-glutamylcysteinyltransferase activity, mRNA_binding Nitrogen_metabolism C3H Transcription_Regulator(from PlantTFDB) GNAT Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13869.5 | NUDIX_2 | 8 | 195 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| mRNA surveillance pathway | cleavage and polyadenylation specificity factor subunit 5 | ko03015 | K14397 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003729 | mRNA binding |
| GO:0005849 | mRNA cleavage factor complex |
| GO:0006378 | mRNA polyadenylation |
| GO:0016787 | hydrolase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.