Annotation of co-expression genes

PH01000440G0850's details annotation

1.Annotation

ICBR annotation: transferase family domain containing protein, expressed

Blast result AT3G13700 : 5.00E-37
Blast annotation: RNA-binding (RRM/RBD/RNP motifs) family protein

2.Location

Scaffold: PH01000440
Strand: -

RegionStartEnd
gene497522508326
mRNA497522508326
exon497522497823
exon500695501533
exon502039502530
exon503641503705
exon504997505066
exon505614505659
exon505864505917
exon506743506871
exon506981507059
exon507411507473
exon507643508326
CDS497678497823
CDS500695501533
CDS502039502530
CDS503641503705
CDS504997505066
CDS505614505659
CDS505864505917
CDS506743506871
CDS506981507059
CDS507411507473
CDS507643507963

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00005.26ABC_tran320422
PF02458.14Transferase510705

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0016747transferase activity, transferring acyl groups other than amino-acyl groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.