PH01000441G0590's details annotation
1.Annotation
ICBR annotation: carboxyl-terminal proteinase, putative, expressed
Blast result AT5G50150 : 6.30E-56
Blast annotation: Protein of Unknown Function (DUF239)
2.Location
Scaffold: PH01000441
Strand: +
| Region | Start | End |
| gene | 420246 | 424411 |
| mRNA | 420246 | 424411 |
| exon | 420246 | 420601 |
| exon | 422279 | 422725 |
| exon | 422779 | 422865 |
| exon | 422964 | 423191 |
| exon | 423785 | 423949 |
| exon | 424047 | 424411 |
| CDS | 420416 | 420601 |
| CDS | 422279 | 422725 |
| CDS | 422779 | 422865 |
| CDS | 422964 | 423191 |
| CDS | 423785 | 423949 |
| CDS | 424047 | 424109 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14365.5 | Neprosin_AP | 210 | 321 |
| PF03080.14 | Neprosin | 334 | 373 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.