Gene details

Annotation of co-expression genes

PH01000444G0090's details annotation

1.Annotation

ICBR annotation: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative, expressed

Blast result AT1G14030 : 7.00E-149
Blast annotation: Rubisco methyltransferase family protein

2.Location

Scaffold: PH01000444
Strand: +

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000373	RLK-Pelle_LRR-Xa (from iTAK) SET Transcription_Regulator(from iTAK) [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity, transcription termination, DNA-dependent, RNA_degradation photosystem II, extrinsic to membrane, oxygen evolving complex, chloroplast, protein refolding,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
Transcription_Regulator(from iTAK)	SET

8.Protein domain

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
null	null	null	null

10.Gene Ontology

GO Accession	GO Annotation
GO:0005515	protein binding
GO:0009507	chloroplast
GO:0030785	[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

    © 2017 All Rights Reserved.